Processed Dataset

ICAT Registration

Register a processed dataset with ICAT

icat-store-processed --beamline id00 \
    --proposal id002207 \
    --path /data/visitor/.../PROCESSED_DATA/integrated_A12 \
    --dataset integrated \
    --sample mysample \
    --raw /data/visitor/.../RAW_DATA/collectionA/collectionA_dataset1 \
    --raw /data/visitor/.../RAW_DATA/collectionA/collectionA_dataset2 \
    -p FIELD1=value1 \
    -p FIELD2=value2

Warning

At least one –raw dataset needs to be provided for ICAT to accept it.

Warning

Processed datasets can only be registered within 90 days after the end of the experiment session to which their raw data belong.

The equivalent in python (metadata is optional)

from pyicat_plus.client.main import IcatClient
from pyicat_plus.client import defaults

client = IcatClient(metadata_urls=defaults.METADATA_BROKERS)

metadata = {"FIELD1": "value1", "FIELD2": "value2"}

client.store_processed_data(
    beamline="id00",
    proposal="id002207",
    dataset="integrated",
    path="/data/visitor/.../PROCESSED_DATA/integrated_A12",
    raw=["/data/visitor/.../RAW_DATA/collectionA/collectionA_dataset1",
         "/data/visitor/.../RAW_DATA/collectionA/collectionA_dataset2",]
    metadata={...}
)

client.disconnect()